Collections:
Double Stranded DNA, mRNA and Transcription
What are Double Stranded DNA and mRNA sequences?
✍: FYIcenter.com
A Double Stranded DNA sequence actually contains two nucleotide strands.
Here is a made-up example:
DNA coding strand (aka Crick strand, strand +1) 5' ATGGCCATTGTAATGGGCCGCTGAAAGGGTGCCCGATAG 3' DNA template strand (aka Watson strand, strand −1) which is the reverse complement of the coding strand 3' TACCGGTAACATTACCCGGCGACTTTCCCACGGGCTATC 5'
The mRNA is derived from the biological transcription process, which does a reverse complement (TCAG → CUGA) from the DNA template strand.
Single stranded mRNA 5' AUGGCCAUUGUAAUGGGCCGCUGAAAGGGUGCCCGAUAG 3’
We can simulate this biological transcription process using the transcribe() function.
fyicenter$ python
>>> from Bio.Seq import Seq
>>> coding_dna = Seq("ATGGCCATTGTAATGGGCCGCTGAAAGGGTGCCCGATAG")
>>> coding_dna
Seq('ATGGCCATTGTAATGGGCCGCTGAAAGGGTGCCCGATAG')
>>> template_dna = coding_dna.reverse_complement()
>>> template_dna
Seq('CTATCGGGCACCCTTTCAGCGGCCCATTACAATGGCCAT')
>>> messenger_rna = coding_dna.transcribe()
>>> messenger_rna
Seq('AUGGCCAUUGUAAUGGGCCGCUGAAAGGGUGCCCGAUAG')
We can also convert the mRNA (messenger_rna) back to the DNA coding strand, using the back_transcribe() function.
>>> coding_dna = messenger_rna.back_transcribe()
>>> coding_dna
Seq('ATGGCCATTGTAATGGGCCGCTGAAAGGGTGCCCGATAG')
⇒ mRNA, Protein and Translation
⇐ Play with the Bio.Seq Module
2023-03-17, 877🔥, 0💬
Popular Posts:
Molecule Summary: ID: FYI-1004182 Names: InChIKey: PTYVVZZUCFZGES-UHFFFAOYS A-NSMILES: NC(=O)C(CS)NC...
Molecule Summary: ID: FYI-1003443 Names: InChIKey: CWQGWAKCTBFURY-UHFFFAOYS A-JSMILES: O.O.O.O.O=C3O...
Molecule Summary: ID: FYI-1001782 SMILES: C1CCCCCCC1 Received at FYIcenter.com on: 2022-12-05
Molecule Summary: ID: FYI-1003899 Names: InChIKey: TYVRENQVLRJGFX-UHFFFAOYS A-NSMILES: CCc5nc(C(N)=O...
Molecule Summary: ID: FYI-1000226 SMILES: CC1=CC(=O)CC2C1(C3CCC4(C (C3CC2)CCC4O)C)CReceived at FYIce...