Scan Prosite Database with Bio.ExPASy.ScanProsite.scan()
Q
How to Scan Prosite Database with Bio.ExPASy.ScanProsite.scan() function?
✍: FYIcenter.com
A
Bio.ExPASy.ScanProsite.scan() function allows to scan the
Prosite database with a given sequence.
Here is an example on how to Scan Prosite Database.
fyicenter$ python
>>> from Bio.ExPASy import ScanProsite
>>> sequence = (
... "MEHKEVVLLLLLFLKSGQGEPLDDYVNTQGASLFSVTKKQLGAGSIEECAAKCEEDEEFT"
... "CRAFQYHSKEQQCVIMAENRKSSIIIRMRDVVLFEKKVYLSECKTGNGKNYRGTMSKTKN"
... )
>>> handle = ScanProsite.scan(seq=sequence)
>>> result = ScanProsite.read(handle)
>>> len(result)
1
>>> result[0]
{'sequence_ac': 'USERSEQ1', 'start': 16, 'stop': 98, 'signature_ac': 'PS50948', 'score': '8.873', 'level': '0'}
⇒ Read Sequence Alignments with Bio.AlignIO
⇐ Fetch Sequences from SwissProt with Bio.ExPASy.get_sprot_raw()
2023-09-05, 1444🔥, 0💬
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