"cid={PubChem_CID}" - Load Molecule from PubMed

Q

How to load a molecule structure with the CID in the Online 3Dmol Viewer?

✍: FYIcenter.com

A

You can use the cid={PubChem_CID} URL parameter to load a molecule structure from https://pubchem.ncbi.nlm.nih.gov/ in the Online 3Dmol Viewer.

https://3dmol.org/viewer.html?cid={PubChem_CID}

For example, enter the following URL in Web browser. You see the molecule structure of Aspirin is displayed in the 3Dmol Viewer.

https://3dmol.org/viewer.html?cid=2244&style=stick

Online 3Dmol Viewer - Load Molecule with CID

Note that the molecule structure data is loaded with the following PubMed API:

https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/{CID}/SDF?record_type=3d

⇒ "url={URL}" - Load Molecule from URL

⇐ "labelres={...}" - residue Label Properties

⇑ Using Online Server of 3Dmol Viewer

⇑⇑ 3Dmol.js FAQ

2023-09-07, 1776🔥, 0💬

"labelres={...}" - residue Label Properties
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"style={...}:..." - Specify Style Attributes
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"style={...};{...}" - Specify Multiple Styles
How to Specify Multiple Styles using the "style={...};{...}" URL parameter in the Online 3Dmol Viewer? If you want overlay the selected structure in multiple styles, you can provide a semicolons separated list of styles. For example, the following URL displays the protein structure overlaid in 2 sty... 2023-09-07, 1373🔥, 0💬

"surface={...}" - Specify Surface Properties
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"select=resi:..." - Select Protein Residues by Numbers
How to select Protein Residues by Numbers using the "select=resi:..." URL parameter in the Online 3Dmol Viewer? There are different ways to select Protein Residues by Numbers: select=resi:{number} - Select single residues. select=resi:{number-number} - Select multiple residues in a range. select=res... 2023-09-07, 1323🔥, 0💬

Hosting Online 3Dmol Viewer
Where to find FAQ (Frequently Asked Questions) on Hosting Online 3Dmol Viewer? Here is a list of tutorials to answer many frequently asked questions compiled by FYIcenter.com team on Hosting Online 3Dmol Viewer. Install Online 3Dmol Viewer on Linux Start Online 3Dmol Viewer on Linux Code Bug in serv... 2023-09-07, 1296🔥, 0💬

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Where to find FAQ (Frequently Asked Questions) on 3Dmol.js Classes and API? Here is a list of tutorials to answer many frequently asked questions compiled by FYIcenter.com team on 3Dmol.js Classes and API. $3Dmol Namespace and Static Methods $3Dmol.download('pdb:...', ...) - Download PDB Protein $3D... 2023-09-07, 1287🔥, 0💬

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How to create 3D Boxes with 3Dmol.js addBox() methods? viewer.addBox() method in the $3Dmol.GLViewer class allows you to create 3D box objects. Here is the signature of the addBox() method: {$3Dmol.GLViewer} addBox({BoxSpec} spec) -> {$3Dmol.GLShape} Here is an HTML code example, Draw-Box.htm... 2023-09-07, 1231🔥, 0💬

addLabel() - Create Text Labels
How to create text labels with 3Dmol.js addSphere() methods? viewer.addSphere() method in the $3Dmol.GLViewer class allows you to create sphere objects. Here is the signature of the addSphere() method: {$3Dmol.GLViewer} addLabel(text, {LabelSpec} options, {AtomSelection} sel) -> {$3Dmol.Label... 2023-09-07, 1209🔥, 0💬

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