URL to Start Online 3Dmol Viewer

Q

What Is URL to Start the Online 3Dmol Viewer?

✍: FYIcenter.com

A

You can use the following URL to the the Online 3Dmol Viewer:

https://3dmol.csb.pitt.edu/viewer.html

The 3Dmol Viewer will display a blank window with a menu icon.

Click the menu icon, you can see 3 options to load the molecule data into the viewer:

Select a molecule data file on your local machine.
Enter a URL where you can download the molecule data.
Enter PDB ID, like "1YCR". The protein data will be downloaded from the the online PDB database.

You can also use the following URL access the online 3Dmol viewer:

https://3dmol.org/viewer.html

⇒ URL Parameters for 3Dmol Viewer

⇐ What Is Online Server of 3Dmol Viewer

⇑ Using Online Server of 3Dmol Viewer

⇑⇑ 3Dmol.js FAQ

2023-09-07, 1232🔥, 0💬

"pdb=..." - Load PDB Data in 3Dmol Viewer
How to load a protein structure with the PDB ID in the Online 3Dmol Viewer? You can use the pdb={PDB_ID} URL parameter to load protein data from https://www.rcsb.org/ in the Online 3Dmol Viewer. https://3dmol.org/viewer.html? pdb={PDB_ID}For example, enter the following URL in Web browser. You see t... 2023-01-06, 1606🔥, 0💬

Display Protein Structure with 3Dmol.js
How to display a protein structure with 3Dmol.js? You can follow these steps to display a protein structure by loading an online PDB file. 1. Get URL of the online PDB file: https://files.rcsb.org/downloa d/1YCR.pdb2. Create an HTML file, View-PDB-Online.html, with the following code. The PDB file l... 2022-12-26, 1485🔥, 0💬

URL to Start Online 3Dmol Viewer
What Is URL to Start the Online 3Dmol Viewer? You can use the following URL to the the Online 3Dmol Viewer: https://3dmol.csb.pitt.edu/vie wer.htmlThe 3Dmol Viewer will display a blank window with a menu icon. Click the menu icon, you can see 3 options to load the molecule data into the viewer: Sele... 2023-09-07, 1233🔥, 0💬

"style=..." - Specify Display Style in 3Dmol Viewer
How to specify display style in the Online 3Dmol Viewer? You can use the style={line|cross|cartoon|stic k|sphere}URL parameter to specify the display style for the selected substructures in the Online 3Dmol Viewer. https://3dmol.org/viewer.html? ...style={line|cross|cartoon|s tick|sphere}For example,... 2023-01-06, 1183🔥, 0💬

Download 3Dmol.js Source Code
How to download the source code of the 3Dmol.js library locally? If you are interested in reading the source code, examples and other resources of the 3Dmol.js library, you can follow these steps to download the source code package. 1. Go to 3Dmol.js Official Release Website . 2. Click "Source code ... 2023-09-05, 1168🔥, 0💬

"select=..." - Select Substructure in 3Dmol Viewer
How to select substructure in the Online 3Dmol Viewer? You can use the select={Selection} URL parameter to select a substructure in the loaded molecule and specify a different style than the whole molecule. https://3dmol.org/viewer.html? select={Selection}&sty le={Style}&select={Sel ect... 2023-09-07, 1097🔥, 0💬

What Is Online Server of 3Dmol Viewer
What Is Online Server of 3Dmol Viewer? Online Server of 3Dmol Viewer is an online service provided by University of Pittsburgh. It allows you to view 3-D structures of molecules including proteins interactively using the 3Dmol.js library. Main features of Online Server of 3Dmol Viewer are: support f... 2023-09-07, 1057🔥, 0💬

URL Parameters for 3Dmol Viewer
What URL Parameters are supported by the Online 3Dmol Viewer? When invoking the Online 3Dmol Viewer, you can add URL parameters to initialize the viewer using this syntax: https://3dmol.org/viewer.html? param1=value1&param2=v alue2&...The 3Dmol Viewer supports the following parameters... 2023-09-07, 1017🔥, 0💬

"select=resi:..." - Select Protein Residues by Numbers
How to select Protein Residues by Numbers using the "select=resi:..." URL parameter in the Online 3Dmol Viewer? There are different ways to select Protein Residues by Numbers: select=resi:{number} - Select single residues. select=resi:{number-number} - Select multiple residues in a range. select=res... 2023-09-07, 1010🔥, 0💬

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